I recently Googled "Bloom Energy" when their box was announced, then clicked on the Google trends link, that resulted in the same type of attack you just wrote about. I has to kill the PID of Firefox twice and reboot before Firefox allowed me to start a new session. Luckily I was using Linux and not Windows because the attack tried to install a exe file, which would have infected a Windows machine. Using Noscript would have prevented the obvious JavaScript based attack, but, LOL, I like to live dangerously. Besides, I really thought Google had a better protection filter running on their results.
So we both had a learning experience.
I checked my /home and /tmp folders and looked to see if any new files were left after the attack, I even checked the hidden files but found nothing. These attacks try to install exe files which can't be run on Linux systems, I've never seen a pdf based exploit, but I'm sure they are out there, but then again, they can't install to a Linux system so I wouldn't worry about it.
NEVER run your system with root privileges, unless your doing administration work. Log out of your session and drop to an init level that exits gdm, kdm etc (init 3 in Debian and Fedora), and never open up your DE (Gnome, KDE, etc) with root as the user. The only way malicious code can infect your computer is if you give it the privileges to do so.
BTW - the site has plenty of room, new threads are welcome. :-)